PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pp3c27_3080V3.3.p
Common NamePHYPADRAFT_163335
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Bryophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella
Family HRT-like
Protein Properties Length: 570aa    MW: 62721.6 Da    PI: 10.3697
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pp3c27_3080V3.3.pgenomeCOSMOSSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like31.92.3e-10362388228
           HRT-like   2 CGviledGsvCkrqPvkgRKRCeeHKG 28 
                        CG++le G  C++ Pvk  KRC+ HK 
  Pp3c27_3080V3.3.p 362 CGALLESGLSCSALPVKSSKRCRLHKK 388
                        **************************5 PP

2HRT-like51.31.9e-16522551130
           HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                        iCG++ledG+vC ++P ++RKRCe+HKG R
  Pp3c27_3080V3.3.p 522 ICGLRLEDGTVCLDPPRPDRKRCEAHKGLR 551
                        8***************************99 PP

Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000006anatomyplant protoplast
PO:0030003anatomyprotonema
PO:0030018anatomygametophore
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MGLVCDMKAV NVREKKKRLK REEYTHVKHD KSFSDWKVLV GSSDWKDHAS GKIPDRYRVS  60
NLPGSNSGPG VYEIGVTPPA WLPSQRSNHS GSLKPQDVVV VYLGCADNVN YHLHRYGQTG  120
AHLEGIRSAR LFNAKNELGS TPKLPQLDKS RSLASESSNT SSDRAPGTDG GYTSIESYGS  180
SDPTDEYQAK SEKKSANPSD QVGSRSPMRG PRLFSEAFAL GCSIAFRWAA TDSKEAAERT  240
ESKLIDVFDY AWKRGGKFRQ RSPEILAKIV KRGALGSNDS HGCFGESSGR VFFVFKRRRV  300
GVTIAARQPS DNSRPFVGSS SRGTDSSKIA AFFAYKFNPP VLVGKSAKTS EFTKLDIPVN  360
RCGALLESGL SCSALPVKSS KRCRLHKKPS HKKPARVAHT SSPTHDSSEV LVRVTQPTEQ  420
GDRPLKRPSP ESSISCFSCL SHSSQVRSNP PEPKRRGSLS FNSWLRTSEL RMAKSREWAE  480
LKNPLGPRPE GTKLSATSYS NILATCEESA CESSRLSTRR DICGLRLEDG TVCLDPPRPD  540
RKRCEAHKGL RNQARPQSPN TYPLRQGMF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1295299KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ppa.175220.0protonema
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001762335.10.0predicted protein
TrEMBLA9S7R90.0A9S7R9_PHYPA; Predicted protein
STRINGPP1S54_246V6.10.0(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.17e-19effector of transcription2
Publications ? help Back to Top
  1. Rensing SA, et al.
    The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants.
    Science, 2008. 319(5859): p. 64-9
    [PMID:18079367]